| Movie | Role |
|---|---|
| Pan's Labyrinth (2006) | Director, Producer, Screenplay |
| El Santos vs la Tetona Mendoza (2012) | Gamborimbo Ponx (voice) |
| The Book of Life (2014) | Producer |
| The Shape of Water (2017) | Director, Producer, Screenplay |
| Biutiful (2010) | Producer |
| Rudo & Cursi (2008) | Producer |
| Guillermo del Toro's Pinocchio (2022) | Director, Producer, Screenplay |
| Pacific Rim (2013) | Director, Producer, Screenplay |
| Trollhunters: Rise of the Titans (2021) | Producer, Screenplay |